PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00617.160
Common NameJCGZ_21451
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 162aa    MW: 18350.9 Da    PI: 7.1637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00617.160genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-062381755
                    HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +  +++L +l+P++  ++ + +s  + Le+A +YIk+Lq
  Jcr4S00617.160  2 KALYSKLNSLVPHQ--TSREPMSLPDQLEEAARYIKKLQ 38
                    56799********8..36666*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-6155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-6155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKALYSKLNS LVPHQTSREP MSLPDQLEEA ARYIKKLQTN LEKMKERKNN LTGNEMENKA  60
SLMSSSRTTM QYLRSPQIEI HEMGSALEIV LITGLDSQFM FNETIRVLHE EGAEIVNANF  120
SAINDTVFHT IHSKISDSTH SCGAARISER LKKLVQDANN PF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091614.11e-118PREDICTED: uncharacterized protein LOC105649551
TrEMBLA0A067JLU21e-118A0A067JLU2_JATCU; Uncharacterized protein
STRINGPOPTR_0011s05320.15e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-45bHLH family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]